The Updater always says Connection refused. Maybe it does not use the proxy? Will ImageJ1 macros, plugins and scripts still work in ImageJ2? Does ImageJ2 support the ImageJ macro language?
Is it deprecated? Yes, see the call-modern-from-legacy tutorial example. ImageJ1-ImageJ2 cheat sheet is available. What is the difference between Fiji and ImageJ? How do I install Fiji? How do I turn my ImageJ installation into a Fiji one? How do I develop Fiji in Eclipse? Please refer to the page Developing Fiji in Eclipse. How can I build Fiji from the command-line? How do I install a Fiji plugin into vanilla ImageJ 1. Doing this is not recommended: Fiji plugin authors test their plugins in Fiji, not vanilla ImageJ 1.
An increasing number of plugins use features of ImageJ2, which are not available in ImageJ 1. If you install multiple plugins with complex dependency chains in this manner, you may have dependency version conflicts.
For things to work, you will need to ensure that all the library versions are compatible. The Fiji maintainers have already solved this problem for the Fiji distribution. So you could save yourself a lot of pain by using Fiji instead.
You will need Git and Maven installed for this to work. What is Maven, and why did you pick it? For details, please refer to our page on Maven. What is MiniMaven and why did you create it? Please refer to the MiniMaven and Supported Compilers pages for an explanation. How do I create a new ImageJ plugin using Maven? Please refer to our page on Maven. How do I upload a new release of an ImageJ plugin? Please refer to the Uploading plugins tutorial. What is the recommended way to develop in ImageJ?
Over the years we evolved a development style as follows: create a topic branch test as much as you need to be comfortable to merge merge deal with any fall-out This development style has been adopted by the ImageJ team, with two additions making the fall-out step much smaller : tests are added as automated regression tests to be run by the continuous integration whenever new changes were pushed whenever possible.
See also coding style. Class loading issue in 3-rd party libraries e. JPPF Libraries trying to load resources or classes with the current thread's class loader rather than with IJ's class loader may fail. This must be done from the same thread that will later call the problematic code: How do I see the source code for a command?
Here are several ways to do so: Using search. Type the name of the command. Click the Source button. This will open the source from the ImageJ web site online source. Note: this method is very convenient, but only works for core ImageJ 1. Open the relevant project in GitHub: E. In the example above, this is Thresholder. This method requires that you know in which repository the code lives. However, you can combine it with search. Unfortunately, you must select this from the menu, not using the Command Finder.
Run the command whose source you want to see. Again, select it from the menu directly, not using the Command Finder. This will open the source using the fiji.
What are 'external' plugins? Where should I put the jars of my plugin? How can I call ImageJ from my software? Does ImageJ work on mobile devices such as Android? Why is there Fiji when there is already ImageJ? And what is this ImageJ2 about? See also: In short: we all collaborate, but have slightly different focus, hence the different projects and names.
Would it make sense to merge the ImageJ2 and Fiji projects? This is a Wiki but I cannot edit it! If you create an account, you will be able to make edits while logged in. We are thankful for all contributions! How do I find more information about Command X? If documentation is missing for the command you're interested in, you can always view the source directly: Open the Command Finder Shortcut: L Filter to the command you're interested in.
You can then use this information to find the source code on GitHub - for core ImageJ or Fiji plugins. From the appropriate project on GitHub, you can find the repository corresponding to the desired plugin.
Finally, you can search for the actual file for the command of interest Shortcut: T. I have a problem that is not covered on this page!
How to report issues? Why not? If you want to increase the chances of your issue being worked on, you can: Report the issue using the Report a Bug plugin in the Help menu. Provide a minimal, complete, verifiable example. Describe what you already tried. Put as much effort into your question as you expect to be put into its response.
Consider debugging the issue yourself and submitting a fix as a pull request. See the bug reporting best practices article for details. How do I contribute a bug fix or patch, or propose an idea for a change? See the Contributing page! Why do you program in Java? See the Philosophy page! Why does ImageJ still target Java 6?
See this mailing list thread for further details. How are you addressing the fact that with increased modularity comes increased complexity? How about a version of ImageJ for the web browser, mobile devices, etc.?
Why is open software vital to science? See the Open Source page! Is Java still free and open source? I heard Oracle is charging for Java now! Add a comment.
Active Oldest Votes. You need JRE which should be there in Mac. Then, you need to install JRE to your machine. Hardik Mishra Hardik Mishra It's installed the first time you try to use it.
I'm not sure if java from the command line should do it but regardless there's a good chance it will need to be installed — Chris Thompson. ChrisThompson: Well.. If that's the case. It will need to be installed.. Thanks for update. ChrisThompson - What do you mean by "it's installed the first time you try to use it? ChrisThompson It still comes with max by default. Make Executable your jar and after that double click on it on Mac OS then it works successfully.
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Jar makes sure the only cookies kept on your Mac are from sites in your history, bookmarks or top sites. No sites to block or unblock, "Remove" buttons to click or maintenance to perform.
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